Archive for February, 2008

Moderate Religions

Posted on February 29th, 2008 by blue collar scientist

Writerdd over on Skepchick, who is quickly becoming one of my favorite bloggers, has some remarks about non-fundamentalist religion:

In comments on another post a few weeks ago, I questioned the idea of criticizing Christians for “cherry picking the Bible” — that is, ignoring the parts they find abhorrent and clinging to the parts they find inspirational…. Ignoring parts of the Bible or Koran should not be ridiculed. It is a good thing that leads away from fanatical violence. We should be encouraging this type of behavior.

I agree, utterly and completely.

The fact is, sensible people will read parts of the Bible and correctly discern that it isn’t a science textbook. In a recent TV interview on the evolution wars, I said that a person reading the first four chapters of Genesis as a story that tells us about human nature - our curiosity, our response to authority, etc - has done a sensible thing. Not as sensible, perhaps, as studying psychology, but they’ve at least read the text and learned from it the things that I think the author was trying to teach. Somewhat more discerning people might read the same text and recognize that it is also a slap in the face to prevailing political and religious institutions in contemporary Babylon - and if so, they’ve done an excellent job of interpreting the text.

Readers who decide those chapters are an anatomy lesson and come to the conclusion that men have fewer ribs than women1 have made a fundamental error about the scope of the text. As have those who believe that it is a textbook for science and/or history. If someone reads the first four chapters of Genesis and still thinks that men and women have the same number of ribs, does it make them an infidel,2 or somehow not-really-Christian3?

Ummm, no, it makes them more sensible than their peers.

In doing the science/skepticism educational activities I’m neck-deep in, I have to communicate with forthrightly religious people all the time. The sensible ones, who lack fundamentalist impulses, have no difficulty grappling with the reality that is demonstrated by experiment. And lest we body-check them for nevertheless believing in god, let’s keep in mind that all but the superheroes among us believe something that isn’t true4.

Dialogues often develop between fundamentalists and less strident religionists in the class discussions that I lead, and my conclusion from these experiences is that I want more of the latter in my world. They are simply much less prone - no, let’s say, not prone at all - to condemning me to a violent end for “believing in” the Big Bang Theory, and shutting out everything I have to say simply because my beliefs aren’t the same as theirs. What’s disturbing about that is my “beliefs” are never aired - they just assume the person they are dealing with is a minion of Satan. As writerdd notes, there is a big gulf in social adjustment between these two populations.

And that is why I distinguish between religious extremists, and everyone else. (Well, that, and because the term marginalizes extremists.)

  1. This is a belief I have actually encountered in the wild. []
  2. From the perspective of fundamentalist Christians. []
  3. From the perspective of an atheist or adherent to another religion. []
  4. That’s actually the most humbling thing about doing science - finding out that your view of reality is seriously messed up, over and over again. []

National Geographic’s Mnemonic Contest

Posted on February 29th, 2008 by blue collar scientist

Some in the astronomy and space community are slightly up in arms about National Geographic’s recent announcement of a winner in a contest to come up with a mnemonic phrase to help remember the names of the planets. The phrase that won the contest, proposed by a ten year old, is:

My very exciting magic carpet just sailed under nine palace elephants.

As has been noted, this would cover the eight bodies defined by the International Astronomical Union as planets, as well as three “dwarf planets.” The Bad Astronomer writes:

Um, NatGeo? I hate to break it to you, but our solar system, officially, has eight planets. Pluto was kicked out years ago. If you want to be a Luddite and still accept Pluto as a planet, that’s fine, but really, Ceres and Eris too?

Nope.

He’s formally right, of course. So where does this confusion come from?

It is a result of the IAU’s adoption of the term “dwarf planet” to describe those bodies that are massive enough for their gravity to overcome rigid-body forces and go into hydrostatic equilibrium (i.e., they are round), but is not massive enough to clear their orbits of debris, and which are not satellites.

My most popular astronomy talk, by far, is the one where I talk about whether Pluto is or is not a planet. That talk got a major revision when the IAU kicked Pluto out of the club, and the change only enhanced the popularity of the talk. Every time I give this talk, I explain the difference between a “planet” and a “dwarf planet,” and invariably, every time during Q&A someone says something like this:

Planet is a noun, and dwarf in this case is an adjective, so the dwarf planets are still planets, just little ones, right?

Umm, no. As far as the IAU is concerned, the terms are “planet” and “dwarfplanet,” two separate and distinct concepts. But it doesn’t stop normal, intelligent, common-sense individuals from thinking otherwise every time I give the talk and explain the difference.

Now, you might think, hey, that just means that your talk is crap, and you aren’t explaining the difference very well. Well, I thought of that, and I’ve made adjustments. I’ve run it by focus groups. I’ve consulted with greater experts than I - both experts in astronomy, and in public speaking. The problem isn’t going away.

More telling, I think, are the number of reporters who asked me exactly the same question in the months following the change. I do a fair amount of media consulting and background sourcing, and I probably talked to over 100 reporters who came to this same conclusion. These are intelligent people who read the press releases, all of which specifically said Pluto was not a planet but a dwarf planet, who nevertheless didn’t realize they were distinct concepts.

The confusion persists to this day. I still get questions from teachers about the definitions, and many of them draw the same conclusion about dwarf planets still being planets, just little itty bitty ones. The general public, when they think of us at all, views the astronomical community as being slightly ridiculous on this issue. Many view these definitions as meaningless hair-splitting, with laypeople having pointing out to me that the only distinction between a Planet and a Dwarf Planet is where it orbits. Their logic is that something as small as Pluto, if it were orbiting in a part of the solar system that had been cleared by other planets - say, between Jupiter and Saturn, where lots of stable solar orbits but not a lot of debris exists - would be considered a planet just by happenstance. Others point out that the definitions don’t really have anything to do with genuinely interesting things about the planets (and dwarf planets), such as how they formed or how they were modified by other processes in the 4.5 billion years since their formation. Others point out that in a hypothetical solar system, it would be possible that a “non-planet” today could have its orbit cleared in a billion years, thus achieving the status of planet merely “by failing to disappear in a flash of light and a puff of smoke,” as one person memorably explained to me.

All of these are reasonable observations for laypeople to make. More perceptive critics have pointed out to me that the definitions are so unclear that IAU felt obligated to define the list of planets and a separate list of dwarf planets, by name, in a footnote to the definitions, presumably so there would be no confusion. (That sure didn’t work out very well.) Many have pointed out that the IAU definition specifically excludes any exoplanet from being called a planet, a condition many find unreasonable. Even more perceptive ones have pointed out that real science doesn’t get voted on, so if these definitions aren’t real science, why pay any attention?

There are good answers to all these questions. Real science does include systematic collections of knowledge, and one way of systematizing knowledge is to categorize it - in this case as planet or not-planet, and to do that you have to define your terms - so to this extent the IAU decision is, sort of, scientific. We call planets orbiting other stars exoplanets, so the formal definition isn’t really burdensome. And so on. Ultimately, though, my answer is that the IAU has not done a good job of settling the definition of planet in an understandable way, and for this reason the term “planet” is more of a cultural, than a scientific, one.

Which brings us back to National Geographic. Were they wrong to call Ceres, Pluto, and Eris “planets” for the purposes of their contest? The phrase is going to be used in an upcoming book, called 11 Planets: A New View of the Solar System. It is being written by David Aguilar, who is no lightweight. He is director of public affairs for the Harvard-Smithsonian Center for Astrophysics, the former director of Fiske Planetarium (in Bad Astronomer’s neck of the woods, I’ll point out), etc. This is not, in other words, just some guy who is writing a book. This is just some very knowledgeable guy who knows everything there is to know about the issue, who is writing a book that will in all likelihood be highly respected and widely read, and who probably has one or several good reasons to call it “Eleven Planets.” Just complaining that it doesn’t follow the rules isn’t going to wash - if this book doesn’t follow the rules, the author is at least in a good position to explain why the rules suck.

What’s going to happen, here? Well, in another year, IAU will have its General Assembly down in Rio. And I’d be surprised if someone hasn’t come up with some better ideas about how to classify planets in the last three years. The only question is whether their ideas will be considered at the Assembly, or not. What I know for sure is, regardless of what IAU does, astronomers should expect to see popular accounts of the solar system fail to conform to the neat little boxes we thought we had drawn around things, and however well we have trained the press, we can still expect to see these distinctions fail to penetrate the awareness of the thoughtful public.

Carnival of Space

Posted on February 28th, 2008 by blue collar scientist

The latest edition of the Carnival of Space has been posted at Starts With A Bang. Enjoy!

Skeptic’s Circle

Posted on February 28th, 2008 by blue collar scientist

The latest Skeptics Circle has been posted at Conspiracy Factory. Please go have a look!

Remembrance of Gigabytes Past

Posted on February 28th, 2008 by blue collar scientist

Martin Rundkvist of Aardvarchaeology writes about the battle between scientism and antiscientism in what some of my colleagues have described, a little less than generously I think, as a “soft science” - archaeology. Martin, who I met at TAM 5.5, writes about the necessity of interpreting data, even in the “hard” physical sciences like astronomy. One part in particular brought back memories (emphasis mine).

Could it be that the anti-scientism archaeologists believed that their work was fundamentally different from natural science because it involved interpretation? Well, in fact, yes. They tended to hint that natural scientists just read their conclusions off of their source material using fancy instruments, and that this would never work with cultural source material. The truth, as anybody who’s ever done real scientific research knows, is that all data must be interpreted in order to be understood and generate knowledge. Hundreds of gigabytes of observational data on quasars from a radio telescope is not astronomical knowledge. It is the necessary raw material of such knowledge. And the first interpretation of such a dataset that is published will not be accepted as knowledge until it has been thoroughly discussed and perhaps repeatedly (though ultimately unsuccessfully) challenged.

Let me tell you, Martin may be more right than he knows.

Replace “hundreds of gigabytes” with “several gigabytes,” “radio telescope” with “optical telescope,” and “quasars” with “asteroids” and you’ll have the position I was in back in 1999. I was a nobody, working at a small, privately owned observatory in southern Arizona. A commercial 0.4 meter Schmidt-Cassegrain was in use at the observatory, popularly referred to as the “POS,” the “telescope that caught on fire,” and “that damn telescope.” It was all we had while a 0.8 meter was constructed and installed, and it suffered from 30% downtime and a huge suite of mechanical and control system idiosyncracies.

My job was writing software to automate this telescope, and its successor, the 0.8 meter. Very early in the game I adopted Bob Denny’s ACP and PinPoint software, because these tools solved a lot of very difficult - or at least tedious to code - problems for me. It took care of things like using COM ports to send commands to telescope firmware, and analysis of images. However, an efficient high-level control system was not, at the time, included, so that is substantially what I set about to write.

The telescope was a major problem. It wouldn’t point accurately. Most telescopes that have problems pointing accurately like this run a layer of software that models the pointing errors. Up to a couple dozen elements go into the model, and when you need the telescope to point somewhere, you tell the model where, and it invisibly calculates the corrections to be made and passes them onto the telescope. In this way, your somewhat balky, misbehaving telescope is supposed to work well. But this telescope wouldn’t point inaccurately in a consistent way. Of the couple dozen coefficients that went into the error model, several of them were stochastic. We needed a 60 percent improvement in pointing, but we could only get about ten percent or so. The solution to this was to take an image after every telescope movement, compare the stars in the picture with a list of stars and their positions from a star catalog, and figure out where we were “really” pointed and make an empirical correction - a small, second slew - afterwards. It added several seconds onto every observation.

The optical mounting was substandard, and allowed the telescope mirror to flop around by several millimeters depending on where in the sky the telescope was pointed. This led to more pointing errors, and to football-shaped stars in our images. The telescope was made of steel, and as the air temperature dropped as the night went on, the telescope shrank. That threw the telescope out of focus.

I jury-rigged a huge bolt to the optical chassis to keep the mirror from flopping around and installed an ingenious focuser that had a temperature sensor and focus-loss model built into firmware that was installed on a BASIC Stamp (remember those?). I wrote all kinds of little routines into the control system to check and see if one of more than two dozen of this telescope’s failure modes had occurred, and recover from it if so. Even so the telescope more often than not failed in some new and novel way halfway through the night, bringing observing to a halt.

The whole thing frankly sucked. The only good thing about it was that we were learning what could go wrong with the 0.8 meter. We benefited a lot from that knowledge.

In the meantime, we were hearing a lot - mostly from the Minor Planet Circulars, where asteroid discoveries are announced - about an outfit called LINEAR. They had a budget in the millions, and were using expensive and classified Air Force technology. They had at first one, then two, telescopes that were designed from the ground up for automated observing of Earth satellites, which they had adapted to hunting for asteroids. They were using a huge, wide-angle CCD camera which we could not have bought even if we could have afforded it (they were classified technology). They had a bunch of experienced software developers to contrast with the single inexperienced one at my observatory (me). And they were sweeping up dozens of new asteroids a night. We didn’t really want to compete with these guys, we just wanted to have an efficient, automated observing capability.

After months of development, we ran the telescope for a full night in completely unattended mode. Then we did it again. And again. It gradually dawned on us that we had a robot on our hands.

We decided to conduct a little stunt. As a way of pointing out to our colleagues that we were automated, we decided to spend a night observing as many known asteroids as we possibly could. We set up a target list of about 400 asteroids, and at the appointed time we unleashed the telescope. We watched it observe the first half-dozen or so, and then went and watched a movie, because the only thing more boring than operating a telescope in person to observe an asteroid is watching a computer do the same thing. Nowadays, people would say “big deal.” At the time, something like this hadn’t been done before for a budget under millions - and we’d had a budget of thousands.

To make useful observations of asteroids, you need to take more than one picture. In our case, we took three images, each separated by about 20 minutes. That’s about 1,200 images by the end of the night.

The following day we had a almost two gigabytes of images sitting on our hard drive. Now this was the late 90’s, and I think the biggest hard drive we had was a two gig drive. I vaguely remember archiving all this data the next day to four or five CD-ROMs.

But it’s only data. Once you have data, you have to reduce it, and that’s what Martin is talking about.

Pictures of asteroids taken in visible light are not very useful for anything except determining the asteroid’s position. The pictures are taken with a fancy digital camera - with cooling modules and extreme sensitivity and so on, but basically just a plain old digital camera - and therefore the picture is made up of pixels. Each pixel covers a certain amount of sky. In our case, each pixel was about 2.8 arcseconds on each side1.

So you want to measure the position of the asteroid, but your camera’s blocky pixels make doing this precisely difficult. This is where centroiding comes in. The idea is that an image of a star - or an asteroid, which looks a lot like a star, only it moves - is actually a smeared-out, blurry disk, with a brighter center and gradually fading edges. A star image like this will typically have a diameter of four or five pixels. Now the brightest part of the star image is where the star “is,” but just by looking you can’t narrow that down very well because of all this smeared-out light and the ‘bigness’ of the pixels.

It turns out that you can model the star image, and calculate from the model where the brightest part of the star image really is, and you can do it to a resolution much finer than that of your sensor. Most astronomers use a model called the point spread function , but there are other choices as well. By using this model, we could take our 2.8 arcsecond images and measure asteroid positions to about 0.3 arcseconds. Pretty slick.

Turns out, that’s the first layer of interpretation that the investigator imposes on the data set. What method to use to centroid the star and asteroid images can influence both the accuracy and precision of the positional measurements.

The next step is to take the list of positions from our 1,200 images and send them off to Gareth Williams, of the Smithsonian Astrophysical Observatory at Harvard. Gareth would take our positions and use them to calculate orbits. How? Would he compute a Vaisala orbit? Well, if the asteroid was a new discovery, he probably would - but otherwise not. If it were a known asteroid, he would add the observations to an existing list of prior observations and compute a much more precise orbit that makes fewer assumptions. Would he just generate some Keplerian elements as a result of this? Yeah, probably - unless the asteroid was “interesting,” for example if it were going to pass close to Earth or some other planet in a way most asteroids never do. If that happened, would he include Newtonian influences? Certainly. Would he deal in relativistic effects? Probably not, but maybe. Would N-body problems come up? Maybe.

How to deal with all this imposes another layer of interpretation.

The end result of all this work is an idea of where the asteroid is, and where it is going to be. An orbit can be visualized in 3-D as though it were a garden hose. The asteroid is a grain of sand somewhere in the hose - not sure exactly where, but definitely within the hose, and at a certain position along the hose’s length. If the asteroid is not well observed, it might be best to visualize the hose as a big fat fire department hose - the uncertainty is bigger. But if it is a well known asteroid, it might be a pebble in aquarium tubing. This lack of exact knowledge about the asteroid’s orbit is known as ‘orbital uncertainty,’ and it arises from measurement errors back when you reduce the data from your images. Only a few asteroids’ orbits are known so well that the orbital uncertainty is always less than their diameters. But almost everything has an orbital uncertainty low enough that we know for certain that it can’t possibly hit something for the foreseeable future (which is often a hundred years or more distant).

The bottom line is that Martin is right - data from the physical sciences is very heavily interpreted indeed. Even in the ultimate automated observing system, in which the telescope automatically generates data and the software automatically reduces it, the methods of interpreting the data would be imposed by the programmer at design-time. There’s no free lunch.

What is really cool about the physical sciences, though, is that despite all of this interpretation, you can have some reasonable level of certainty about your results. There is simply no other plausible explanation for the phenomenon we call “asteroids” than to believe that there are big chunks of rock (etc) orbiting the sun in very specific, well-measured paths, and that these bodies respond to well-defined physical laws.

Today, the only asteroid work we do is the occasional interesting near-earth object and the occasional discovery of a new main-belt asteroid. But the same system observes variable stars, exoplanet transits, active galactic nuclei, and a bunch of other interesting things.

  1. That will seem grossly big to astronomers, but this telescope was optically terrible, and our seeing was also gross. We had a pretty good match between our PSF and our sampling. []

8-year old discovers dinosaur tracks

Posted on February 27th, 2008 by blue collar scientist

NewsDaily, Shortnews, and a bunch of other outlets are reporting that Rhys Nichols has discovered dinosaur tracks while walking on the beach near Scarborough, North Yorkshire, with his father. Rhys is eight years old, proving the oft-repeated adage that paleontology and astronomy are the two disciplines to which amateurs commonly make scientific contributions.

It is reported they are probably Iguanodon tracks from the Jurassic.

“This is a great find as dinosaur prints are not normally that clear,” archaeologist Will Watts said, “Looking at the size of the prints, the dinosaur was probably the same size as Rhys.”

Umm - archaeologist?

Nova: The Four Winged Dinosaur

Posted on February 27th, 2008 by blue collar scientist

Microraptor
Microraptor fossil. The image is from Wikimedia Commons, where it is licensed under the Creative Commons Attribution ShareAlike 2.5 license. Unfortunately, no author name is provided.

I’ve just finished watching the latest Nova, which aired last night (all praise be to TIVO). The episode was about Microraptor.

The early part of the documentary set up some controversy by contrasting the ideas of Larry Martin with those of various AMNH paleontologists and staff, and their collaborators at other institutions. Martin proposes that the development of flight from ground-dwelling dinosaurs1 doesn’t make much sense, without really giving any compelling reasons. He also says that this model is necessary for the evolution of birds from dinosaurs, and again, I don’t fully understand why he thinks that. As I’m fond of saying here, just because you say something doesn’t make it true. I’m unable to think of a reason that arboreal dinosaurs developing flight means that birds can’t have evolved from dinosaurs.

He did make a reproduction of Microraptor which featured splayed femurs. The documentary covered pretty convincingly why the reproduction was not plausible - even I could see that Martin’s pelvis was flatter than a pancake. The documentary covered the similarity of the splayed rear-limb model to lizard anatomy, but I don’t think I really understood why Martin believed - even if everything else he said was true, which I wasn’t convinced of - that Microraptor could not have secondarily splayed rear limbs.

Anyone?

The AMNH team certainly seemed to be doing the better science from what Nova presented. Not only was their model constructed with some pretty rigorous methods, they recruited a multidisciplinary team of experts in various fields and hiked out to a wind tunnel to test it. It made Martin’s approach look a bit parochial. The latter half of the documentary seemed to abandon any further coverage of Martin’s work.

The wind tunnel scene was pretty interesting. I’ve been part of similar groups of scientists trying out and testing new ideas, and what Nova showed is pretty much how scientists act - on the whole very competitive, but very collegial and with few exceptions willing to admit it when the data proves them wrong. As usual, Nova was well worth watching.

  1. the “ground-up” model, as he puts it, which for some reason has me picturing dinosaurs flying into airplane propellers end ending up as ingredients in my hamburger []

Creationists Laud New Fishing Lure Technology

Posted on February 27th, 2008 by blue collar scientist

Creationists have hailed the development of a new material for the manufacture of fishing lures, as reported yesterday by Science Daily.

The new lures were developed to reduce the environmental impact of lost “soft baits” like rubber worms and twisters. Such lures do not stay on the hook well, and contain high levels of phthalates, which have been implicated in a variety of health problems.

Creationists have hailed the new technology as a significant leap forward in their efforts to deceive people into accepting anti-evolution propaganda. “This new technology means that we can make even more realistic reproductions that look vaguely like the pictures of fossils we downloaded off the internet” said Hardin Yoyo, author of Atlas of Caddis Fly Ties Misrepresented As Living Insects. The book, weighing in at 23 metric tons, is famous for having pioneered the use of fishing lures in place of live specimens.

While creationists have praised the new technology, it was developed for entirely secular purposes. The new material utilizes microfibers embedded in the soft plastic lure to increase retention of the lure on the hook, and reduce phthalate use in manufacturing. Both reduce the environmental impact of fishing.

Religious interests believe that the new technology could be put to use in a variety of ways.

“It is our hope that with this new material, realistic reproductions of fruit flies might be created, that will allow us to conduct genetics and medical research on an equal footing with the materialist godless scientists,” said Anderson Eggface, of the Theological Genetics Department at the National Institute of Technology in France. “Fruit flies have long been the oppressed slaves of scientific investigators studying mutation and development,” Eggface noted, adding when asked about hox gene influence on development that a fly can be trained to do just about anything. “Scientists are barking up the wrong tree here. It isn’t genes that make legs where fly antennae should go. We just know we have the answer - Goddidit. The ability to make durable fruit flies in whatever shape we desire should push forward our research into the glory of God as revealed in His creation.”

Michael Brayhay, biochemist at Leelow University, added, “Fly legs are irreducibly complex, even if they do grow out of an antenna hole. Therefore, evolution is false. As you can see, that’s a significant limitation of science.”

The new creationist plans were criticized by godless evolutionary biologist Peasey Meyers. “Perhaps for their next great advance they can figure out how to surgically remove the fishhooks from their insect forgeries” he suggested while sorting through octopus pictures his readers had sent in. He questions whether the creationist plans are consistent with humane treatment of research subjects: “Having a fishhook crammed down the center of your body like that has to hurt like hell,” he noted.